Well, I found the data directory using the server command trick, they were very well hidden.
E:\<Username>\Docs\Documents\AtomicTorchStudio\VoidExpanse
I have a smaller SSD as my system drive, so I moved my Documents folder to E:\<Username>\Docs to prevent it from taking up prime SSD space. Something in the way your software checks the path decided to append an additional Documents directory inside the main documents directory, hiding the AtomicTorchStudio folder in there. So far, this is the only game that has done so, I have plenty of game folders in E:\<Username>\Docs but nothing else in the Docs\Documents folder.
Here is the log files zipped
https://drive.google.com/file/d/0B8K32ujSURqBUE1zUGF6MDRrUlk/view?usp=sharing
Oh and thanks for the science station suggestion, I just found that in game last night but didn't have near enough money to try it out! BTW, there is two spelling mistakes in the menu where the scientist asks you if you want to use the holodeck. The options to pay 800 science points or 150000d (commas!) both say "Rest Skills" when that should be "Reset Skills" and the first option says you can spend 800 skill points to reset your skills, should be Science Points. I can probably scare up a screenshot if you need it, but you can see it yourself by going to science guy and asking to use holodeck for skill reset.
E:\<Username>\Docs\Documents\AtomicTorchStudio\VoidExpanse
I have a smaller SSD as my system drive, so I moved my Documents folder to E:\<Username>\Docs to prevent it from taking up prime SSD space. Something in the way your software checks the path decided to append an additional Documents directory inside the main documents directory, hiding the AtomicTorchStudio folder in there. So far, this is the only game that has done so, I have plenty of game folders in E:\<Username>\Docs but nothing else in the Docs\Documents folder.
Here is the log files zipped
https://drive.google.com/file/d/0B8K32ujSURqBUE1zUGF6MDRrUlk/view?usp=sharing
Oh and thanks for the science station suggestion, I just found that in game last night but didn't have near enough money to try it out! BTW, there is two spelling mistakes in the menu where the scientist asks you if you want to use the holodeck. The options to pay 800 science points or 150000d (commas!) both say "Rest Skills" when that should be "Reset Skills" and the first option says you can spend 800 skill points to reset your skills, should be Science Points. I can probably scare up a screenshot if you need it, but you can see it yourself by going to science guy and asking to use holodeck for skill reset.