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Sure, here's the server log for the improperly closed mission.  You'll notice that I did complete that same mission earlier at a different location without any issue.

Logs/Log_VoidExpanse_Server_2014-08-08_23-19.log (https://www.dropbox.com/s/g0t9hx862eyoar4/Log_VoidExpanse_Server_2014-08-08_23-19.log)

Update: I started a new save file with a different seed and have not encountered either of the two bugs mentioned above.  However, after completing an ore delivery mission, receiving my reward, and then returning to the Station Commander, saw that the quest remained open.  (The dialogue option was still present, prompting me to gather another 150 Glepsite.)  Here's the log snippet for that:

9.8.14 03:01:08.3764: Important:
Dialog with NPC Ship Station Commander (ID=8173) started
127.0.0.1:64850; 1 Vinzent Zeppelin

9.8.14 03:01:10.0245: Important:
Dialog topic changed: generic_quest_ore_delivery
127.0.0.1:64850; 1 Vinzent Zeppelin

9.8.14 03:01:10.0445: Error:
Script error! generic_quest_ore_delivery:80 : function anonymous :: TypeError: undefined cannot be converted to an object

9.8.14 03:01:10.0445: Important:
Dialog batch:
>> Good job! Now we can finally complete our repairs. Here is your money.

127.0.0.1:64850; 1 Vinzent Zeppelin

I don't have enough information to reproduce it, since this is the only time it's occurred.  I'll do some experimenting tomorrow.

Thanks for the quick response.  I started a new save file to do some testing on this, and it turns out that the inventory/sale bug persists.  I checked the server log immediately after attempting to sell something and saw another "specified cast is not valid" error (timestamp 19:37:48.3474).

Here are the relevant files:

slot_1 (https://www.dropbox.com/s/pu44y0imf6ntm19/slot_1.zip)
Logs/Log_VoidExpanse_Server_2014-08-06_19-01.log (https://www.dropbox.com/s/dgo95xpbg1y7j0o/Log_VoidExpanse_Server_2014-08-06_19-01.log)
VoidExpanse_Data/output_log.txt (https://www.dropbox.com/s/7l18vkaqpr6lmtr/output_log.txt)

Edit: Just checked, and I'm still getting the "you already have a lot of tasks" response from station commanders as well, so it doesn't seem to be a save file issue.

I found it through Scott Manley's preview of it a couple months back.

[Invalid mission states]

After about 10 hours of play-time, here are the major issues I've found.  Running 0.9.5 on AMD FX-6300, R9 270X, Windows 7.

Invalid mission states
After a crash-to-desktop upon jumping through a gate, I restarted the game and found that Station Commanders would only offer this response when I asked about missions:

5.8.14 23:55:57.7575: Important:
Dialog batch:
>> Sorry, I haven't got anything for you now. Besides, you already have a lot of tasks. Complete them first, and then come back - and then maybe, I'll have something for you.

I looked around and saw that faction missions I had previously completed were also "re-opened"; i.e. the relevant NPC had a dialogue option corresponding with the mission's final stage.  Putting two and two together, I guessed that this was also the reason I couldn't get new missions from Station Commanders; the server still read them as being in progress, but I had no way to finish them.  I've found nothing in the log files regarding the crash itself or anything indicating a corrupted save file.

No sale
Perhaps the biggest issue I've seen is that I cannot properly sell anything when in station except for consumables and trade goods.  The interface works properly in that I could select and drag the item to the left (and shift-click), but I get no money from selling equipment or hulls.  The item is moved to the station's inventory where it is listed with a cost of 0, but when attempting to move that item back to my own inventory, I'm charged the regular price.  This occurs to and from ship and storage inventory.  I checked the server log and noticed a runtime error that may relate to this:

6.8.14 00:03:18.8317: Error:
Exception occured while processing command: StationSellItem id=8516
127.0.0.1:61703

Exception Specified cast is not valid.
   -------------------------stack-------------------------
   at stHYWsbTy2aB0TTaYE7.p4kGHQGze9Tbfn6UJS5.DkDq416jUt(Item  , ItemsContainer  , UInt32  , UInt32  , Boolean  )
   at AtomicTorch.SpaceRPG.Server.DataObjects.ItemsContainer.OnItemAltered(Item item, Byte slotId)
   at AtomicTorch.SpaceRPG.Server.DataObjects.ItemsContainer.OnItemAdded(Item itm, Byte slotId)
   at AtomicTorch.SpaceRPG.Server.DataObjects.ItemsContainer.AddItem(UInt32 slotId, UInt32 itemId, Boolean bRaiseEvents)
   at AtomicTorch.SpaceRPG.Server.Modules.InventoryModule.MoveItemFromContainerToContainer(UInt32 itemId, ItemsContainer srcContainer, ItemsContainer destContainer, Byte destSlot, UInt16 quantity, UInt16& movedQuantity)
   at AtomicTorch.SpaceRPG.Server.Modules.InventoryModule.MoveItemFromContainerToContainer(UInt32 itemId, UInt32 srcContainerId, UInt32 destContainerId, Byte destSlot, UInt16 quantity, UInt16& movedQuantity)
   at LVCY5KGiCAu67XnvLY8.de11fIG5m1YCQXjPZl7.PeoaBgPZA2(CommandSellItem  )
   at LVCY5KGiCAu67XnvLY8.de11fIG5m1YCQXjPZl7.HandleCommand(BaseCommand  )
   at MjHgvnGXDP5ElHrJn8M.tdZTYdGJZTvQL368Pvd.BIGCNd4MES(BaseCommand  )

Will keep playing and reporting on any other problems I find.  I'm honestly surprised the game hasn't picked up a lot more attention; it definitely has the potential to be an amazing indie hit.